Research Insight

CRISPR/Cas9-Mediated Knockout of Drought-Sensitive Genes Improves Maize Tolerance  

Xingzhu Feng
Hainan Institute of Biotechnology, Haikou, 570206, Hainan, China
Author    Correspondence author
Maize Genomics and Genetics, 2025, Vol. 16, No. 6   doi: 10.5376/mgg.2025.16.0027
Received: 20 Sep., 2025    Accepted: 30 Oct., 2025    Published: 24 Nov., 2025
© 2025 BioPublisher Publishing Platform
This is an open access article published under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
Preferred citation for this article:

Feng X.Z., 2025, CRISPR/Cas9-mediated knockout of drought-sensitive genes improves maize tolerance, Maize Genomics and Genetics, 16(6): 294-303 (doi: 10.5376/mgg.2025.16.0027)

Abstract

Maize (Zea mays L.) plays a crucial role in ensuring global food security, yet its productivity is severely threatened by recurrent drought stress in many regions. Conventional breeding approaches have achieved limited success in improving drought resilience due to the complex and polygenic nature of drought tolerance. In this study, we explore the application of CRISPR/Cas9 genome editing technology as a precise and efficient strategy for enhancing drought tolerance in maize. By reviewing recent advances, we identified key drought-sensitive genes such as ZmNAC111, ZmPP2C-A10, and ZmDREB2A, which were targeted for knockout using various transformation techniques including Agrobacterium-mediated and biolistic methods. Functional validation and field evaluations of CRISPR-edited maize lines demonstrated significant improvements in physiological and agronomic traits under drought conditions, including enhanced root development, reduced stomatal conductance, better water retention, and higher yield stability compared to wild-type plants. The findings highlight that gene knockouts effectively mitigate drought-induced physiological stress and optimize water use efficiency. Although challenges remain regarding off-target effects, regulatory frameworks, and public acceptance, CRISPR/Cas9 offers a transformative platform for integrating molecular precision with traditional breeding. This study underscores the potential of genome editing in developing drought-resilient maize varieties and anticipates future advancements through multiplex editing and next-generation CRISPR technologies.

Keywords
CRISPR/Cas9; Drought tolerance; Maize; Gene knockout; Genome editing

1 Introduction

Corn (Zea mays L.) is the star on the dining tables in many countries and an important source of industrial raw materials and feed. Its significance is no longer merely as a staple food; it is related to the nutritional intake and livelihood stability of millions of people around the world. However, the problem is not small either. In recent years, droughts caused by climate change have become increasingly frequent. Sometimes they not only last for a long time but also have a high intensity. Corn has naturally become one of the "victims", with its output declining and the global food system also affected (Sami et al., 2021).

 

Drought is not a new term, but it is indeed one of the most troublesome abiotic stresses. It not only disrupts the growth rhythm of plants but may also affect the entire physiological process (Kumar et al., 2023). Especially for crops like corn that are more sensitive to water, the blow is even more obvious. In addition to reduced production, drought may also affect grain quality and even plant health. Ultimately, it affects not only farmland, but the entire supply chain and farmers' income (Peer et al., 2024).

 

However, things are not that simple. Want to solve the problem of drought resistance through breeding? The difficulty is much greater than imagined. On the one hand, behind the drought resistance of corn lies a complex genetic network, with many genes working together (Chen, 2025). On the other hand, although traditional breeding methods are quite experienced in improving some traits, they are inadequate in enhancing drought resistance. The reasons include long time consumption and low efficiency. In addition, alleles with drought resistance characteristics are also rare in natural germplasm (Lorenzo et al., 2022). As for genetically modified organisms? Technically, there is some hope, but in reality, it is often limited by policy restrictions and public concerns (Joshi et al., 2020).

 

Against this backdrop, CRISPR/Cas9 genome editing technology has gradually been regarded as a breakthrough. It is not like traditional methods that require "slow work to produce fine results", nor is it as controversial as genetically modified organisms. What we want to explore is its application potential in the drought resistance improvement of corn. By precisely knocking out or modifying drought-sensitive genes, this technology may be able to accelerate the breeding process of drought-resistant varieties to a certain extent. This study will discuss the current research progress, key target genes, and the feasibility of incorporating CRISPR/Cas9 into breeding programs, and further analyze the challenges and prospects involved.

 

2 Mechanisms of Drought Sensitivity in Maize

2.1 Drought perception and signal transduction pathways in maize

When corn is short of water, it first "detects" environmental changes. This reaction is not completed instantaneously but is accompanied by the interweaving of a series of molecular signals. The first to be activated is often the abscisic acid (ABA) signaling pathway-which is mentioned in almost all drought studies, but the response rate and intensity vary in different tissues. When water begins to decrease, ABA accumulation prompts stomata to gradually close to reduce water loss, while simultaneously initiating a series of stress-related genes (Jiang et al., 2025). In this pathway, receptors (PYL/RCAR), protein phosphatases (PP2Cs), and kinases (SnRK2s) act like a relay team, transmitting signals layer by layer and ultimately guiding cells to respond (Cao et al., 2021).

 

However, ABA is not a "solo". Other hormones such as auxin and cytokinin also get involved. Sometimes they cooperate and sometimes they "go against", thus making the response of corn more flexible. Calcium signals and MAPK cascade reactions act like amplifiers, converting external drought signals into stronger cellular responses (Wang et al., 2022). Overall, this system is more like a constantly fine-tuned network rather than a simple one-way path.

 

2.2 Role of stress-responsive genes and their regulatory networks

After the drought came, the gene expression in corn was almost "rewritten", and thousands of genes began to change (Zhao et al., 2025). Some genes are responsible for directing-transcription factors such as WRKY, NAC, DREB, bZIP, etc. Some act directly, such as antioxidant enzymes SOD, CAT, and POD, as well as proteins involved in hormone synthesis or signal transduction. Transcription factors check and coordinate with each other, forming a complex regulatory network, which ultimately enables corn to maintain osmotic balance, metabolic adjustment and defense response under stress.

 

For instance, ZmWRKY30 and ZmDIR11 can enhance antioxidant and hormone metabolism, thereby improving drought resistance (Figure 1). However, there are also opposite examples. For instance, when ZmPL1 or ZmPP2C-A10 is overexpressed, corn becomes more vulnerable instead (Gu et al., 2024). Furthermore, the natural differences in gene regulatory elements and expression dynamics also lead to significant variations in the performance of different varieties under drought conditions (Liu et al., 2020). In other words, drought resistance is not a single "genetic victory", but the result of the entire genetic network.

 


Figure 1  (A). Total lignin content in WT and mutant lines subjected to both normal and drought treatments; (B). Phenotypic photographs of WT and mutant lines after various treatments, T1 and T3, represent two ZmDIR11-EMS mutant lines with different mutation profiles; Scale bar = 10 cm; (C–G). Growth parameters of WT and mutant lines T1 and T3 under normal and drought conditions, which include above-ground length, root length, fresh weight, dry weight, and chlorophyll content in leaves (from C to G, respectively); (H). Proline (Pro) content in the leaves of WT and mutant lines T1 and T3 under normal and drought treatments. Data are presented as the mean of triplicate values, with error represented as standard deviation (SD). Statistical significance is indicated as non-significant (ns), p < 0.05 (*), and p < 0.01 (**) (Adopted from Zhao et al., 2025)

 

2.3 Physiological traits influenced by genetic sensitivity to drought

From the appearance, corn with poor drought resistance often has withered, curled leaves, and even yellowing leaves, as well as a decline in photosynthesis and a reduction in biomass-these signs are all familiar to everyone. However, if one looks deeper, it will be found that the accumulation of reactive oxygen species (ROS) and reactive nitrogen species (RNS) is the key issue, and they are particularly severe in sensitive corn (Yousaf et al., 2023). If the antioxidant system is weak, the cell structure is prone to damage.

 

Those genotypes that can hold up usually have stronger antioxidant enzyme activity, more stable osmotic regulation ability (such as accumulation of proline and soluble sugar), and can also maintain a better photosynthetic level under stress. These seemingly physiological differences are actually closely related to the response efficiency of signaling pathways and the regulation of related genes.

 

3 CRISPR/Cas9 as a Genome Editing Tool in Plants

3.1 Mechanism of CRISPR/Cas9: double-strand breaks and repair pathways

In plants, the core of gene editing is actually not "cutting", but "repairing". The reason why the CRISPR/Cas9 system is powerful is that it can create a double-strand break (DSB) at a specific position in DNA, and all of this relies on guide RNA (gRNA) to lead the Cas9 enzyme to the target sequence (Bao et al., 2019). Once a break occurs, cells will naturally attempt to repair it. The commonly used methods mainly include two: non-homologous end joining (NHEJ) and homologous recombination (HR). The former is like random mending, prone to errors. Thus, insertion or deletion (indel) has become a common outcome, which is precisely exploited by scientists to "knock out" a certain gene. The latter is more meticulous and requires providing repair templates that can achieve precise rewriting (Xue and Greene, 2021).

 

However, most plant somatic cells prefer to use NHEJ, which makes CRISPR/Cas9 particularly adept at creating loss-of-function mutations. Strictly speaking, it is not a "perfect fix", but rather a natural strategy of "winning by mistake".

 

3.2 Advantages over traditional breeding and RNA interference (RNAi)

To talk about the advantages of CRISPR/Cas9, we first need to look at the limitations of the old methods. Traditional breeding relies on hybridization, screening and backcrossing, which has a long cycle, low efficiency and is also limited by genetic background. CRISPR/Cas9 can precisely "target" and modify, much faster, and can also modify multiple genes at once (Ahmad, 2023).

 

RNA interference (RNAi) may sound like it can also silence genes, but it usually only reduces expression and does not achieve complete knockout. Sometimes, off-target problems may also occur (Chen et al., 2019). In contrast, CRISPR/Cas9 not only has high specificity but also can yield stable and heritable mutant strains. More importantly, some strategies can even leave no trace of exogenous DNA after editing, thus bypassing the "genetically modified" label and making it much easier in terms of regulation and public acceptance. In other words, this technology makes "precision" and "tracelessness" possible.

 

3.3 Transformation methods in maize: agrobacterium-mediated, biolistic, and RNP delivery

For CRISPR/Cas9 to truly function in corn, the key lies not in the "scissors", but in "putting the scissors in". There are three common practices, each with its own advantages and disadvantages. Agrobacterium-mediated transformation is the most common, which integrates the CRISPR/Cas9 DNA construct into the plant genome by means of Agrobacterium rhizocarpus. This approach is mature and reliable, but it is not very friendly to certain genotypes of corn, and the insertion position is often random (Li et al., 2021). Another method is the gene gun technique, which uses high-speed particles to directly inject DNA or Cas9-gRNA ribonucleoprotein (RNP) into cells. This method is particularly suitable for monocotyledonous plants like corn, and it can also avoid introducing exogenous DNA when using RNP, achieving true "non-GMO" editing. The third type-RNP delivery-is actually an extension of the gene gun method: Cas9 and gRNA are pre-assembled and then delivered into cells, eliminating the transcription and translation process, improving efficiency, and reducing the risk of off-target. Now it has been proven to be successfully applied in corn, being both clean and efficient.

 

4 Identification and Selection of Drought-Sensitive Genes

4.1 Omics-based screening of candidate genes under drought stress

In corn research, it is not easy to find truly "effective" drought-resistant genes. Scientists often have to dig for clues bit by bit from vast amounts of data. High-throughput technologies such as transcriptome, metabolome and genome-wide association studies (GWAS) are precisely the main tools of this "journey to search for genes". Under drought stress, the transcriptional levels of corn of different genotypes changed astonishingly-thousands of differentially expressed genes (DEGs) were detected, which were involved in signal transduction, antioxidation, hormone synthesis and even metabolic regulation (Zenda et al., 2019; Waititu et al., 2021).

 

Metabolomics fills in another piece of the puzzle. Some metabolites, such as molecules involved in tryptophan or amino acid metabolism, have been found to be closely related to drought resistance performance (Li et al., 2024). Meanwhile, GWAS and quantitative trait loci (QTL) analyses also identified several key regions, revealing genes related to differences in drought tolerance-including transcription factors and signaling pathway components (Wu et al., 2021). These results collectively indicate that the drought resistance of corn is the product of a multi-level network rather than a story dominated by a single gene.

 

4.2 Functional studies validating gene roles in drought responses

The candidate genes have been identified. The next step is to confirm that they are "really useful". Researchers usually verify gene functions by means of overexpression, knockout or transgenesis. Taking ZmPP2C15 and ZmNAC111 as examples, the CRISPR/Cas9 tool helps researchers directly observe their "role changes" in drought response (Pang et al., 2024).

 

When positive regulatory factors are overexpressed, corn becomes more resilient-the activity of antioxidant enzymes increases, osmotic protective substances rise, and water use efficiency is also better. Conversely, once those negative regulatory factors or drought-sensitive genes are knocked out, drought resistance can also be improved (Liu et al., 2022). In other words, enhancing drought tolerance is not solely dependent on "strengthening"; sometimes, "weakening" certain genes can be more effective. These experiments have provided empirical evidence for the theory and also offered conclusive evidence for understanding the drought adaptation mechanism of corn.

 

4.3 Notable drought-sensitive genes targeted in maize: ZmNAC111, ZmPP2C-A10, ZmDREB2A

Among the numerous candidate genes, ZmNAC111, ZmPP2C-A10 and ZmDREB2A frequently appear in research reports and have also become key targets for gene editing. ZmNAC111 is a transcription factor of the NAC family, and its expression is inhibited by the insertion of MITE elements in the promoter. If it is allowed to overexpress, the water use efficiency and drought tolerance of corn will be significantly improved. ZmPP2C-A10 belongs to Class A PP2C phosphatase, but its function is exactly the opposite-it inhibits drought tolerance response. Research has found that reducing or knocking out this gene can enhance drought resistance by regulating ABA signaling and reducing water loss.

 

As for ZmDREB2A, it is activated almost "instantly" when drought strikes, and then regulates a series of downstream stress genes, enabling plants to maintain homeostasis in adverse conditions (Gulzar et al., 2021). The discovery of these genes not only explains the different performances of corn under drought conditions, but also provides a practical basis for subsequent targeted improvement using CRISPR/Cas9.

 

5 Case Study: Field Application of CRISPR-Edited Maize Lines

5.1 Description of editing strategy and target gene(s)

Among the numerous attempts at corn gene editing, ARGOS8 is a target that has been repeatedly mentioned. It was originally a negative regulatory factor for the ethylene reaction. That is to say, once its expression level is adjusted, it can indirectly affect the plant's response to stress. Researchers used the CRISPR/Cas9 tool to precisely modify ARGOS8: some inserted the natural GOS2 promoter in its 5 'untranslated region, while others replaced the original promoter with this promoter (Bashir et al., 2021). These treatments enable the genes to be continuously highly expressed in multiple tissues.

 

After all the modifications were completed, the researchers verified them one by one through PCR and sequencing, confirming that the ARGOS8 site had undergone the expected changes. Although the steps are complex, this idea of "promoter replacement" provides a new entry point for the functional improvement of corn.

 

5.2 Comparative evaluation: edited vs. wild-type lines under controlled drought conditions

The real test is not in the laboratory but in the field. The research team planted the CRISPR-edited ARGOS8 strain under both drought and normal irrigation conditions, and used the wild type (WT) as a control. It was found that the edited plants showed stable performance under drought stress during the flowering period, and the transcriptional level of ARGOS8 significantly increased (Namata et al., 2025).

 

Agronomic traits, especially grain yield, are closely monitored-the edited plants not only have enhanced drought resistance but also maintain good yield. Meanwhile, similar strategies have also been applied to the modification of other drought-related genes, such as ZmPL1 and ZmGA20ox3. The researchers respectively evaluated the responses of these plants at the physiological and biochemical levels, and the results also showed positive effects. It can be said that these experiments have truly brought CRISPR from a "laboratory tool" to "farmland application".

 

5.3 Results and interpretation: improved growth, yield, and stress marker expression

Under drought stress conditions, the ARGOS8 editing strain performed significantly better than the wild type. Field data show that the average yield per unit area increased by approximately 5 bushels, while no negative impact was observed under conditions of adequate moisture (Wang et al., 2024). More detailed observation revealed that the physiological indicators of the edited strain were also more ideal-water loss was slower, reactive oxygen species (ROS) accumulated less, and antioxidant enzyme activity was higher. Similar improvement effects have also emerged in other gene-edited strains. For example, the plants edited with ZmPL1 showed improvements in germination rate and survival rate (Figure 2), while the contents of MDA and ROS decreased and the expression of stress-related genes was stronger (Wang et al., 2025). The ZmGA20ox3 edit strain exhibits an interesting "semi-dwarf" characteristic, which is often accompanied by higher levels of abscisic acid (ABA) and jasmonic acid (JA). They still maintained good yields under drought (Liu et al., 2023). Overall, these results indicate that corn regulated by CRISPR can not only "live better" but also "produce more", providing a practical molecular pathway for drought-resistant breeding.

 


Figure 2 Knockdown of ZmPL alleviate the inhibition of seed germination rate and root length under drought stress.(a) seeds of WT and transgenic lines germinated on filter paper soaked of PEG6000. Scale bar = 0.5 cm. (B, C) statistics of germination rate and root length for different genotypes. Using Student’s t-test, asterisks indicate statistically significant differences (*p <0.05; **p < 0.01). Data are shown as mean ± SD from three independent experiments (Adopted from Wang et al., 2025)

 

6 Impacts of Gene Knockouts on Drought Tolerance

6.1Alterations in root system architecture and stomatal regulation

When plants are in drought, the first to "react" are not the leaves but often the roots and stomata. Gene knockout can precisely bring profound changes in these two aspects. Taking corn as an example, researchers knocked out the DSD1/ZmICEb gene using CRISPR/Cas9 technology. As a result, stomatal density decreased, water use efficiency improved, and yield loss under stress was significantly reduced (Zhou et al., 2025).

 

Interestingly, the knockout of the ZmHDT103 gene did not make plants "weak"; instead, it reduced the pore size of stomata, decreased water loss, and at the same time promoted the accumulation of abscisic acid (ABA) and increased peroxidase activity. These two changes seem independent, but they jointly enhance the regulation of stomata and antioxidant capacity. Overall, these modifications have enabled plants to learn to "conserve" during droughts: reducing transpiration and maintaining internal water content, thus surviving the stage of water deficiency.

 

6.2 Enhanced water retention, reduced wilting, and better photosynthetic performance

If the changes in stomata help plants save water, then water retention and photosynthetic performance determine how long they can "survive". In CRISPR-edited strains targeting negative regulatory factors such as ZmPL1 and ZmHDT103, researchers observed higher leaf water content, less wilting, and higher seedling survival rates under drought stress.

 

The levels of reactive oxygen species (ROS) and malondialdehyde (MDA) in these plants decreased, indicating that cell membrane damage was alleviated and oxidative stress was also reduced. Meanwhile, the activity of antioxidant enzymes and the content of proline increase, making osmotic regulation more effective and the cells more stable. It is precisely for this reason that they can still maintain the efficiency of photosynthesis during droughts.

 

Similar results have also been repeatedly verified in crops such as rice and wheat-whether overexpressing positive regulatory genes or knocking out negative regulatory factors, it can increase chlorophyll content, reduce stomatal conductance, and ultimately improve survival rate (Usman et al., 2020; Abdallah et al., 2022). In other words, different crops, in different ways, reached similar physiological outcomes.

 

6.3 Stable yield performance under moderate to severe drought stress

The real test is still the output. No matter how well the laboratory performs, the key lies in whether the field can "hold up". Multiple field and controlled environment trials have shown that gene-edited corn yields are more stable and even slightly increase under drought conditions. For instance, the ARGOS8 variant showed a significant increase in grain yield under drought conditions during the flowering period, while no reduction occurred when there was sufficient water (Rai et al., 2023). Similarly, corn with DSD1/ZmICEb and ZmHDT103 knocked out also reduced yield loss. These results indicate that gene knockout is not merely an experimental phenomenon but a strategy that can be translated into actual agronomic advantages. Overall, these studies reveal a trend-through precise gene editing, corn is expected to achieve "stable production without reduction" in water-scarce environments, which is of great significance to agriculture in areas frequently hit by droughts.

 

7 Challenges and Considerations in CRISPR-Based Drought Tolerance

7.1 Off-target effects and their detection and mitigation

In gene editing, what often worries researchers the most is not "unable to cut", but "cutting in the wrong place". The off-target problem of CRISPR/Cas9 is just like this-when the guide RNA is too similar to other genomic sequences, unexpected mutations may occur. However, the good news is that in a complex genome like that of corn, as long as the guide RNA is properly designed and has at least three base misaligns with non-target regions, especially in the seed region near the PAM, the risk of off-target is usually extremely low (Young et al., 2019).

 

There are also more and more methods for detecting such unexpected edits. Computational prediction tools, whole-genome testing (such as CLEAVE-Seq), and direct validation in plants can all help scientists "identify" these minor biases (Erdogan et al., 2023). In addition, high-fidelity Cas9 variants, shorter grnas, and the delivery method in the form of RNP have also been proven to effectively enhance specificity. Overall, these improvements often result in less off-target variation than natural mutations in traditional breeding. In other words, this "precision revolution" is more controllable than people imagine.

 

7.2 Regulatory landscape and public acceptance of gene-edited crops

A scientific breakthrough does not mean that one can immediately go to the fields. The regulation and public acceptance of CRISPR-edited crops remain the key factors determining their fate. The attitude in the United States is relatively open-if exogenous DNA is not introduced into plants, they are often not classified as strictly genetically modified (Ahmar et al., 2023), which has accelerated the pace of commercialization.

 

But not all countries are so optimistic. In regions such as the European Union and New Zealand, gene-edited crops are still treated as genetically modified, with slow approval and numerous restrictions (Ansari et al., 2020). The public's attitude is also complex: what they care about is not the technical principle, but safety, transparency, and "whether it is genetically modified or not". Therefore, using RNP delivery to obtain edited corn without exogenous fragments might alleviate some concerns and bring science closer to society.

 

7.3 Integration with breeding programs and scaling for field use

The maturity of technology does not mean that it can be immediately transformed into breeding achievements. Integrating CRISPR/Cas9 into the traditional breeding system requires more collaboration and patience. Take multi-genome editing strategies such as BREEDIT as an example. They can simultaneously modify multiple genes, accelerate trait improvement, and also help screen out the optimal drought-resistant gene combination (Shelake et al., 2022).

 

However, problems also arise: corn of different genotypes show significant differences in transformation and regeneration, and the editing efficiency varies. Some laboratory achievements fail to adapt to the local environment when they reach the fields. Therefore, for these technologies to truly take root, molecular biologists, breeders and regulatory authorities must act together to bridge the last mile from the laboratory bench to the farmland (Ying et al., 2025). Otherwise, the breakthroughs in the laboratory might still remain at the level of papers.

 

8 Concluding Remarks and Future Directions

CRISPR/Cas9 is no longer a new term in the research of corn drought resistance, but the changes it has brought are still impressive. By targeting and regulating negative regulatory factors such as ZmPL1, ZmHDT103 and ARGOS8, researchers have successfully obtained corn materials that can still achieve stable yields in arid environments. Unlike traditional breeding, these edited plants are not only drought-tolerant but also maintain a good physiological state-less oxidative stress, higher water content and survival rate, while with almost no yield loss under normal conditions. It can be said that this efficient and precise tool has brought the climate-adaptive breeding of corn into an "accelerated stage".

 

It is worth noting that the research has not been confined to a single gene. Multiple CRISPR strategies are emerging as a new direction, such as the BREEDIT process, which can edit multiple genes or gene families at once, helping researchers deal with complex polygenic traits like drought resistance. This approach has produced a richer combination of mutations, providing the possibility of screening out the optimal gene pairings. Meanwhile, the new generation of editing systems-base editing, guide editing and non-GMO RNP delivery-have further enhanced accuracy, reduced the risk of off-target, and also gained greater flexibility at the regulatory level. Together, they have broadened the boundaries of crop improvement, making it possible to deal with multiple stresses.

 

However, to truly bring these achievements into the fields, cross-disciplinary cooperation is still needed. Molecular methods alone are far from enough; the combination of genomics, physiology and agronomy is the key. Multi-omics analysis is helpful in identifying new candidate targets, while the accumulation of field phenotypic and physiological data can verify the performance of these editing strains in real-world environments. In the future, the collaboration among molecular biologists, breeders and regulatory agencies will determine whether CRISPR-edited corn can truly be applied on a large scale. Only when science, policy and public awareness keep pace simultaneously can this technology have a sustained impact on global agriculture.

 

Acknowledgments

I extend my heartfelt appreciation to Dr. Zhou for her guidance, insightful suggestions, and dedicated contributions during the study’s finalisation.

 

Conflict of Interest Disclosure

The author affirms that this research was conducted without any commercial or financial relationships that could be construed as a potential conflict of interest.

 

References

Abdallah N., Elsharawy H., Abulela H., Thilmony R., Abdelhadi A., and Elarabi N., 2022, Multiplex CRISPR/Cas9-mediated genome editing to address drought tolerance in wheat, GM Crops & Food, 16(1): 1-17.

https://doi.org/10.1080/21645698.2022.2120313

 

Ahmad M., 2023, Plant breeding advancements with “CRISPR-Cas” genome editing technologies will assist future food security, Frontiers in Plant Science, 14: 1133036.

https://doi.org/10.3389/fpls.2023.1133036

 

Ahmar S., Hensel G., and Gruszka D., 2023, CRISPR/Cas9-mediated genome editing techniques and new breeding strategies in cereals: current status, improvements, and perspectives, Biotechnology Advances, 61: 108248.

https://doi.org/10.1016/j.biotechadv.2023.108248

 

Ansari W., Chandanshive S., Bhatt V., Nadaf A., Vats S., Katara J., Sonah H., and Deshmukh R., 2020, Genome editing in cereals: approaches, applications and challenges, International Journal of Molecular Sciences, 21(11): 4040.

https://doi.org/10.3390/ijms21114040

 

Bao A., Burritt D., Chen H., Zhou X., Cao D., and Tran L., 2019, The CRISPR/Cas9 system and its applications in crop genome editing, Critical Reviews in Biotechnology, 39(3): 321-336.

https://doi.org/10.1080/07388551.2018.1554621

 

Bashir S., Hussain A., Hussain S., Wani O., Nabi S., Dar N., Baloch F., and Mansoor S., 2021, Plant drought stress tolerance: understanding its physiological, biochemical and molecular mechanisms, Biotechnology & Biotechnological Equipment, 35(1): 1912-1925.

https://doi.org/10.1080/13102818.2021.2020161

 

Cao L., Lu X., Wang G., Zhang Q., Zhang X., Fan Z., Cao Y., Wei L., Wang T., and Wang Z., 2021, Maize ZmbZIP33 is involved in drought resistance and recovery ability through an abscisic acid-dependent signaling pathway, Frontiers in Plant Science, 12: 629903.

https://doi.org/10.3389/fpls.2021.629903

 

Chen M.L., 2025, Insights into optimizing cultivation practices for enhanced yield and quality in fresh-eating maize, Bioscience Methods, 16(1): 11-22.

https://doi.org/10.5376/bm.2025.16.0002

 

Chen K., Wang Y., Zhang R., Zhang H., and Gao C., 2019, CRISPR/Cas genome editing and precision plant breeding in agriculture, Annual Review of Plant Biology, 70: 667-697.

https://doi.org/10.1146/annurev-arplant-050718-100049

 

Erdoğan İ., Cevher-Keskin B., Bilir Ö., Hong Y., and Tör M., 2023, Recent developments in CRISPR/Cas9 genome-editing technology related to plant disease resistance and abiotic stress tolerance, Biology, 12(7): 1037.

https://doi.org/10.3390/biology12071037

 

Gu L., Chen X., Hou Y., Cao Y., Wang H., Zhu B., Du X., and Wang H., 2024, ZmWRKY30 modulates drought tolerance in maize by influencing myo-inositol and reactive oxygen species homeostasis, Physiologia Plantarum, 176(4): e14423.

https://doi.org/10.1111/ppl.14423

 

Gulzar F., Fu J., Zhu C., Yan J., Li X., Meraj T., Shen Q., Hassan B., and Wang Q., 2021, Maize WRKY transcription factor ZmWRKY79 positively regulates drought tolerance through elevating ABA biosynthesis, International Journal of Molecular Sciences, 22(18): 10080.

https://doi.org/10.3390/ijms221810080

 

Jiang S., Sun Z., Feng Z., Qi Y., Chen H., Wang Y., Qi J., Guo Y., Yang S., and Gong Z., 2025, ZmCIPK33 and ZmSnRK2.10 mutually reinforce the abscisic acid signaling pathway for combating drought stress in maize, Journal of Integrative Plant Biology, 67(4): 13906.

https://doi.org/10.1111/jipb.13906

 

Joshi R., Bharat S., and Mishra R., 2020, Engineering drought tolerance in plants through CRISPR/Cas genome editing, 3 Biotech, 10(8): 367.

https://doi.org/10.1007/s13205-020-02390-3

 

Kumar M., Prusty M., Pandey M., Singh P., Bohra A., Guo B., and Varshney R., 2023, Application of CRISPR/Cas9-mediated gene editing for abiotic stress management in crop plants, Frontiers in Plant Science, 14: 1157678.

https://doi.org/10.3389/fpls.2023.1157678

 

Li C., Brant E., Budak H., and Zhang B., 2021, CRISPR/Cas: a Nobel Prize award-winning precise genome editing technology for gene therapy and crop improvement, Journal of Zhejiang University Science B, 22(4): 253-284.

https://doi.org/10.1631/jzus.b2100009

 

Li R., Wang Y., Li D., Guo Y., Zhou Z., Zhang M., Zhang Y., Würschum T., and Liu W., 2024, Meta-quantitative trait loci analysis and candidate gene mining for drought tolerance-associated traits in maize (Zea mays L.), International Journal of Molecular Sciences, 25(8): 4295.

https://doi.org/10.3390/ijms25084295

 

Liu S., Li C., Wang H., Wang S., Yang S., Liu X., Yan J., Li B., Beatty M., Zastrow-Hayes G., Song S., and Qin F., 2020, Mapping regulatory variants controlling gene expression in drought response and tolerance in maize, Genome Biology, 21: 163.

https://doi.org/10.1186/s13059-020-02069-1

 

Liu S., Liu X., Zhang X., Chang S., Chen C., and Qin F., 2022, Co-expression of ZmVPP1 with ZmNAC111 confers robust drought resistance in maize, Genes, 14(1): 8.

https://doi.org/10.3390/genes14010008

 

Liu Y., Chen Z., Zhang C., Guo J., Liu Q., Yin Y., Hu Y., Xia H., Li B., Sun X., Li Y., and Liu X., 2023, Gene editing of ZmGA20ox3 improves plant architecture and drought tolerance in maize, Plant Cell Reports, 43(1): 1-16.

https://doi.org/10.1007/s00299-023-03090-x

 

Lorenzo C., Debray K., Herwegh D., Develtere W., Impens L., Schaumont D., Vandeputte W., Aesaert S., Coussens G., De Boe Y., Demuynck K., Van Hautegem T., Pauwels L., Jacobs T., Ruttink T., Nelissen H., and Inzé D., 2022, BREEDIT: a multiplex genome editing strategy to improve complex quantitative traits in maize, The Plant Cell, 34(12): 4567-4582.

https://doi.org/10.1093/plcell/koac243

 

Namata M., Xu J., Habyarimana E., Palakolanu S., Wang L., and Li J., 2025, Genome editing in maize and sorghum: a comprehensive review of CRISPR/Cas9 and emerging technologies, The Plant Genome, 18(1): e70038.

https://doi.org/10.1002/tpg2.70038

 

Pang Y., Cao L., Ye F., Chen C., Liang X., Song Y., and Lu X., 2024, Identification of the maize PP2C gene family and functional studies on the role of ZmPP2C15 in drought tolerance, Plants, 13(3): 340.

https://doi.org/10.3390/plants13030340

 

Peer L., Bhat M., Lone A., Dar Z., and Mir B., 2024, Genetic, molecular and physiological crosstalk during drought tolerance in maize (Zea mays): pathways to resilient agriculture, Planta, 260(4): 81.

https://doi.org/10.1007/s00425-024-04517-9

 

Rai G., Khanday D., Kumar P., Magotra I., Choudhary S., Kosser R., Kalunke R., Giordano M., Corrado G., Rouphael Y., and Pandey S., 2023, Enhancing crop resilience to drought stress through CRISPR-Cas9 genome editing, Plants, 12(12): 2306.

 

Sami A., Xue Z., Tazein S., Arshad A., Zhu Z., Chen Y., Zhu X., and Zhou K., 2021, CRISPR–Cas9-based genetic engineering for crop improvement under drought stress, Bioengineered, 12(1): 5814-5829.

https://doi.org/10.1080/21655979.2021.1969831

 

Shelake R., Kadam U., Kumar R., Pramanik D., Singh A., and Kim J., 2022, Engineering drought and salinity tolerance traits in crops through CRISPR-mediated genome editing: targets, tools, challenges, and perspectives, Plant Communications, 3(2): 100417.

https://doi.org/10.1016/j.xplc.2022.100417

 

Usman B., Nawaz G., Zhao N., Liao S., Liu Y., and Li R., 2020, Precise editing of the OsPYL9 gene by RNA-guided Cas9 nuclease confers enhanced drought tolerance and grain yield in rice (Oryza sativa L.), International Journal of Molecular Sciences, 21(21): 7854.

https://doi.org/10.3390/ijms21217854

 

Waititu J., Zhang X., Chen T., Zhang C., Zhao Y., and Wang H., 2021, Transcriptome analysis of tolerant and susceptible maize genotypes reveals novel insights into drought responses, International Journal of Molecular Sciences, 22(13): 6980.

https://doi.org/10.3390/ijms22136980

 

Wang C., Zhou Y., Wang Y., Jiao P., Liu S., Guan S., and Yang Y., 2025, CRISPR-Cas9-mediated editing of ZmPL1 gene improves tolerance to drought stress in maize, GM Crops & Food, 16(1): 1-16.

https://doi.org/10.1080/21645698.2024.2448869

 

Wang X., Guo Y., Wang Y., Peng Y., Zhang H., and Zheng J., 2024, ZmHDT103 negatively regulates drought stress tolerance in maize seedlings, Agronomy, 14(1): 134.

https://doi.org/10.3390/agronomy14010134

 

Wang Y., Guo H., Wu X., Wang J., Li H., and Zhang R., 2022, Transcriptomic and physiological responses of contrasting maize genotypes to drought stress, Frontiers in Plant Science, 13: 928897.

https://doi.org/10.3389/fpls.2022.928897

 

Wu X., Feng H., Wu D., Yan S., Zhang P., Wang W., Zhang J., Ye J., Dai G., Fan Y., Li W., Song B., Geng Z., Yang W., Chen G., Qin F., Terzaghi W., Stitzer M., Li L., Xiong L., Yan J., Buckler E., Yang W., and Dai M., 2021, Using high-throughput optical phenotyping to decipher the genetic architecture of maize drought tolerance, Genome Biology, 22(1): 185.

https://doi.org/10.1186/s13059-021-02377-0

 

Xue C., and Greene E., 2021, DNA repair pathway choices in CRISPR-Cas9-mediated genome editing, Trends in Genetics, 37(9): 850-863.

https://doi.org/10.1016/j.tig.2021.02.008

 

Ying Q.B., Chen Q., Lei K.Z., and Liu H.Z., 2025, Case study: breeding maize varieties with high protein content, Molecular Plant Breeding, 16(1): 93-104.

http://dx.doi.org/10.5376/mpb.2025.16.0010

 

Young J., Zastrow-Hayes G., Deschamps S., Svitashev S., Zaremba M., Acharya A., Paulraj S., Peterson-Burch B., Schwartz C., Djukanovic V., Lenderts B., Feigenbutz L., Wang L., Alarcon C., Šikšnys V., May G., Chilcoat N., and Kumar S., 2019, CRISPR-Cas9 editing in maize: systematic evaluation of off-target activity and its relevance in crop improvement, Scientific Reports, 9(1): 6729.

https://doi.org/10.1038/s41598-019-43141-6

 

Yousaf M., Riaz M., Shehzad A., Jamil S., Shahzad R., Kanwal S., Ghani A., Ali F., Abdullah M., Ashfaq M., and Hussain Q., 2023, Responses of maize hybrids to water stress conditions at different developmental stages, PeerJ, 11: e14983.

https://doi.org/10.7717/peerj.14983

 

Zenda T., Liu S., Wang X., Liu G., Jin H., Dong A., Yang Y., and Duan H., 2019, Key maize drought-responsive genes and pathways revealed by comparative transcriptome and physiological analyses of contrasting inbred lines, International Journal of Molecular Sciences, 20(6): 1268.

https://doi.org/10.3390/ijms20061268

 

Zhao Z., Guan Y., Qin T., Zheng H., Wang H., Xu W., Gu W., Yu D., Wei J., and Hu Y., 2025, A dirigent gene, ZmDIR11, positively regulates drought tolerance in maize, Agronomy, 15(3): 604.

https://doi.org/10.3390/agronomy15030604

 

Zhou W., Yin J., Zhou Y., Li Y., He H., Yang Y., Wang X., Lian X., Dong X., Zhang Z., Chen L., and Hou S., 2025, DSD1/ZmICEb regulates stomatal development and drought tolerance in maize, Journal of Integrative Plant Biology, 67(6): 1487-1500.

https://doi.org/10.1111/jipb.13890

 

Maize Genomics and Genetics
• Volume 16
View Options
. PDF(672KB)
. HTML
Associated material
. Readers' comments
Other articles by authors
. Xingzhu Feng
Related articles
. CRISPR/Cas9
. Drought tolerance
. Maize
. Gene knockout
. Genome editing
Tools
. Email to a friend
. Post a comment